About Olivier
I am a Bioinformatician / Python dev / Data engineer, with a solid hands-on experience in cloud computing in AWS.
Searching for a bioinformatician to build robust, scalable pipelines in a few days?
As a Nextflow expert, I can leverage the most update-to-date Data / Cloud stacks to speed up your bioinformatics workflows and implement solid testing and deployment.
As a former PhD / Post-doc in wet lab biology, I am not only doing computer science for biology. I do understand the needs of biologists and I can leverage my developer skills to build ready to use web applications.
Technical skills:
- Bioinformatics: Nextflow (expert), genomics, transcriptomics, metagenomics, Galaxy (local implementation and administration of a Galaxy instance), Benchling, ImageJ
- Full-fledged general Python developer
- Data engineering: Polars, Pandas, AWS ECS / Batch / Glue, Airbyte, Dbt, Airflow
- AWS: IAM, EC2, S3, ECR, DynamoDB, ParallelCluster, StepFunctions
- Cloud: Terraform
- Dataviz: Dash plotly (very experienced, multiple apps déployed in production), MultiQC, matplotlib
- Devops: Docker, micromamba, Gitlab
- Warehouse: Postgres, Redshift
- Web: Dash (Flask), FastAPI, Celery, Django
- Experienced R developer
Reach out so we can discuss on your needs and on how we can collaborate to meet your objectives!
French
Native or bilingual
English
Fluent
Can work on-site
Paris (up to 30km)
Experience
- EGCE (CNRS)Post-doctoral researcherRESEARCHMay 2025 - Today (1 year and 1 month)Gif-sur-Yvette, FranceChromosome-level assembly of a large insect genome with high repeat content.Multiple Nextflow pipelines created for various projects.
- CenareoSoftware / Data engineerSOFTWARE PUBLISHINGOctober 2024 - Today (1 year and 7 months)Toulouse, FranceConstruction de processus ETL pour récupérer des données média d'utilisateurs depuis leurs comptes de réseaux sociaux. Intégration dans une app Django
- Micropep TechnologiesBioinformatician & Data EngineerJuly 2021 - September 2024 (3 years and 3 months)Auzeville-Tolosane, FranceBio-informatician dedicated to finding the best targets for peptide molecules. Development of pipelines in AWS, management of SQL databases, setup of ETL workflows.
Reviews
Anne-Camille
Head of computational biology - Generare
Reviewed on 29.12.2025
Nous avons sollicité Olivier pour une PoC liée à une stack technique courante en bioinfo mais rare dans d'autres domaines data afin d'explorer différentes solutions de déploiements Cloud, avec une emphase particulière sur la capacité à scale. Olivier a parfaitement compris nos attentes et a réussi à livrer des résultats exploitables dans les temps. Notre point de contact a eu une indisponibilité imprévue mais ça n'a pas impacté la qualité du travail d'Olivier, ce qui témoigne de son sérieux et de son autonomie.
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Education
- DoctoratUniversité Paris-Saclay2018Thèse à l'INRAE de Versailles en biologie végétale
- IngénieurEcole Polytechnique2015Biologie, physique, informatique, mathématiques
Skill set
Categories
- Other