About Simo
Arabic
Native or bilingual
English
Fluent
French
Native or bilingual
Danish
Conversational
German
Conversational
Experience
- Resolve Biosciences, Bioinformatics unit,Scientist / Bioinformatics DataAnalystBIOTECHMarch 2023 - Today (3 years and 3 months)Monheim am Rhein, NW, Germany• ● Develop algorithms applied to analyze Molecular Cartography (MC) data and other spatial transcriptomics experiments• ● Develop pipelines to perform corrections, process images, and align pathology images produced from our instruments (cell segmentation - cell typing - feature engineering - diagnostics - registration - etc…)• ● Map transcriptomic/proteomic results from MC on top of acquired images• ● Optimize different operations in our pipelines to produce more reliable results with high precision and specificity• ● Develop solutions to efficiently manage data across all the company• ● Provide solution to instrument team and microscopy
- Max Delbrück Centre / BIMSB,Phd CandidateBIOTECHMarch 2019 - March 2022 (3 years)Berlin, Germany• ● Develop algorithms applied to RNA secondary structure• ● Used probabilistic modeling methods to approach complex problems in the realm of RNA structure (python, R, C++, Perl, HPC…)• ● Developed tools for and publishing (web dev)• ● Developed pipelines for analyzing transcriptomics data• ● Assisted to teach bioinformatics to MSc students at Freie UniMeyer Group Team & Contact
- The Danish Cancer Society, Computational Biology Laboratory,ResearchAssistant, BioinformaticianFebruary 2018 - July 2018 (5 months)Denmark• ● Development of new tools/packages for analysis of cancer transcriptomics/lipidomics data in R/RShiny• ● Analysis of NGS data in melanoma, medulloblastoma, breast cancer• ● IT-team: server maintenance, software installation, user management, partial management of Github repository
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Education
- MSc BioinformaticsUniversity of Copenhagen2018MSc Bioinformatics
- BSc ComputerAl Akhawayn University2014BSc Computer